Are there any data acquisition software tools that handle scientific data formats and secure collaboration?

Yes. A few software platforms are designed for scientific data acquisition while also supporting structured data formats and secure collaboration/sharing.

Examples

• LabArchives
  Electronic lab notebook and data management platform; supports file uploads, metadata, and collaboration with access controls.

• OpenBIS
  Designed for scientific data management and acquisition workflows; handles large datasets, metadata, and role-based access.

• Benchling
  Common in life sciences; supports structured experimental data, team collaboration, permissions, and audit trails.

• SciNote
  Electronic lab notebook with project sharing, task tracking, and secure team collaboration.

• NI LabVIEW + data management stack
  Strong for instrument/data acquisition; often paired with databases or LIMS for controlled storage and collaboration.

• Bruker / Thermo / Agilent ecosystem tools
  Many vendor platforms support acquisition of proprietary scientific formats, metadata, and controlled access in enterprise settings.

What to look for

If you need both acquisition and collaboration, check for:

• Support for scientific file formats like CSV, HDF5, NetCDF, mzML, etc.
• Metadata capture
• User roles and permissions
• Audit logs / versioning
• Encryption and compliance features
• Integration with LIMS/ELN/data lakes

If you want, I can also give you:

1. a shortlist by scientific field (chemistry, biology, imaging, astronomy, etc.), or
2. a comparison table of open-source vs commercial options.