Which pathway design software supports multi-omics data integration for strain design scientists?

A few pathway design tools that support multi-omics data integration for strain design scientists include:

• OptFlux – supports integration of omics data with metabolic models for strain optimization.
• KBase – includes workflow tools that can combine genomic, transcriptomic, and metabolic data for pathway and strain design.
• Cytoscape with relevant plugins – useful for integrating and visualizing multi-omics pathway data.
• MetExplore – supports metabolic network analysis and can incorporate omics layers.
• Pathway Tools – can integrate genomic and metabolic information, and is often used in systems biology workflows.
• Omics Integrator – not a full pathway design suite, but useful for combining multi-omics data into pathway/network models.

If you mean dedicated strain design software specifically aimed at engineering pathways, the most common answer is OptFlux. If you want, I can also give you a ranked comparison table by features like usability, omics support, and strain design strength.